PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g16020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24584.3 Da    PI: 9.8126
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g16020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k+y +
  Peinf101Scf00049g16020.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVYSF 63
                              68889999**************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-27783IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-31766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.432767IPR002100Transcription factor, MADS-box
CDDcd002657.62E-33875No hitNo description
PRINTSPR004049.1E-18929IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAKKPSMGRQ RIKIAKIEMK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV  60
YSFGHPNVES IIDRFFSRNP HPISNRLHIV EAHRHANVLE LNLKITQILG ELEVEKKKGE  120
TLDQMRKTNQ SQYWWEAPIG ELALHELEQL KESMEDLKKN VTTQATKLMI HENSNTSSFL  180
AMNGVGIFDN YDLKPVIAAS SNPHNHTFGY DHGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-14892186Myocyte-specific enhancer factor 2A
3kov_B1e-14892186Myocyte-specific enhancer factor 2A
3kov_I1e-14892186Myocyte-specific enhancer factor 2A
3kov_J1e-14892186Myocyte-specific enhancer factor 2A
3p57_A1e-14892186Myocyte-specific enhancer factor 2A
3p57_B1e-14892186Myocyte-specific enhancer factor 2A
3p57_C1e-14892186Myocyte-specific enhancer factor 2A
3p57_D1e-14892186Myocyte-specific enhancer factor 2A
3p57_I1e-14892186Myocyte-specific enhancer factor 2A
3p57_J1e-14892186Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587873.11e-122PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-60AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLM1DUY31e-110M1DUY3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000948161e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-55AGAMOUS-like 62